Epoch Flyer Glitch

I am running Chrono Trigger on 2.6a. I have piracy fix enabled and its working. I just beat Dalton after escaping from the Blackbird and should get command prompts for me to control the Epoch. I don't get the commands though. Just wondering if anyone else got this problem. I haven't seen many references to this particular glitch. Anyone have any tips? Thanks.

Just press random buttons? Some boxes etc. may not be showing. Haven't heard of a problem like yours yet.